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407 Open 2,679 Closed
407 Open 2,679 Closed
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Issues list

Stop using system Python environment in the Toil containers
#5322 opened May 28, 2025 by adamnovak
Un-uninstallable blinker module makes Toil Docker build fail.
#5320 opened May 28, 2025 by adamnovak
1
Toil not recognizing CWL workflows that come from Dockstore by TRS spec
#5319 opened May 22, 2025 by adamnovak
1
SLURM Shebang Line Issues with slurm.py
#5318 opened May 20, 2025 by jasongallant
1
Automatically increase Docker container memory limit when below Docker resource constraints
#5316 opened May 18, 2025 by stxue1
1
Toil 8.x prints the output of nvidia-smi to stderr at the beginning of each run bug intern
#5306 opened May 7, 2025 by glennhickey
@DailyDreaming
2
Better missing Dockstore version error message
#5303 opened Apr 28, 2025 by unito-bot
Make URL access implementations pluggable enhancement intern
#5302 opened Apr 28, 2025 by unito-bot
1
@haileyhemmingsen
1
Add Globus file access/URL support to Toil enhancement intern
#5300 opened Apr 28, 2025 by unito-bot
@haileyhemmingsen
Make project outline and checkpoints with expected progress for plugin-ization project
#5299 opened Apr 28, 2025 by unito-bot
@adamnovak
Get and run Toil on top 20 WDL workflows from Dockstore intern wdl
#5298 opened Apr 28, 2025 by unito-bot
2
WDL Directory support wdl
#5296 opened Apr 28, 2025 by unito-bot
@adamnovak
1
Cannot lsof on NSFS file systems
#5295 opened Apr 28, 2025 by stxue1
2
Cache Quay containers on CI to speedup builds
#5294 opened Apr 28, 2025 by stxue1
Pull in tests for CWL chaining that show how it doesn't happen as much as we would like cwl enhancement intern testing
#5291 opened Apr 25, 2025 by adamnovak
the HistoryManager needs to be improved to handle more concurrent access; perhaps history entries can be recorded in separate files and then combined later as-needed?
#5289 opened Apr 24, 2025 by adamnovak
Cromwell-specific Pair definition not supported enhancement intern wdl
#5286 opened Apr 18, 2025 by stxue1
Handle not having a stat binary bug intern
#5283 opened Apr 17, 2025 by adamnovak
1
src/toil/test/utils/utilsTest.py::TestUtils::testGetStatusFailedCWLWF test is flaky testing
#5282 opened Apr 17, 2025 by adamnovak
History database migrations/table creations aren't properly protected by transactions bug
#5281 opened Apr 16, 2025 by adamnovak
src/toil/test/utils/utilsTest.py::TestUtils::testUtilsSort is flaky testing
#5279 opened Apr 14, 2025 by adamnovak
Deadlock detection test is flaky testing
#5278 opened Apr 14, 2025 by adamnovak
CI: most mesos tests are not being run
#5273 opened Apr 9, 2025 by mr-c
Retry and increase resources for CWL files
#5267 opened Apr 3, 2025 by stkgo
1
Move code out of __init__.py
#5261 opened Mar 27, 2025 by DailyDreaming
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